.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/data_analysis/plot_cd4.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_data_analysis_plot_cd4.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_data_analysis_plot_cd4.py:


CD4 dataset
============

.. GENERATED FROM PYTHON SOURCE LINES 6-17

.. code-block:: Python


    # Author: Steven Golovkine <steven_golovkine@icloud.com>
    # License: MIT

    # Load packages
    import matplotlib.pyplot as plt
    import numpy as np

    from FDApy import read_csv
    from FDApy.visualization import plot








.. GENERATED FROM PYTHON SOURCE LINES 18-19

In this section, we will use the CD4 dataset to illustrate the use of the package concerning irregularly sampled functional data. The dataset contains CD4 counts for :math:`366` patients. The dataset can be downloaded from the `here <https://github.com/StevenGolovkine/FDApy/blob/examples/examples/data/cd4.csv>`_. This is an example of a :class:`~FDApy.representation.IrregularFunctionalData` object. It also shows how the CSV file should be formatted and can be read using the :func:`~FDApy.read_csv` function.

.. GENERATED FROM PYTHON SOURCE LINES 19-25

.. code-block:: Python


    # Load data
    cd4_data = read_csv("../data/cd4.csv", index_col=0)

    _ = plot(cd4_data)
    plt.show()



.. image-sg:: /auto_examples/data_analysis/images/sphx_glr_plot_cd4_001.png
   :alt: plot cd4
   :srcset: /auto_examples/data_analysis/images/sphx_glr_plot_cd4_001.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 1.730 seconds)


.. _sphx_glr_download_auto_examples_data_analysis_plot_cd4.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_cd4.ipynb <plot_cd4.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_cd4.py <plot_cd4.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_cd4.zip <plot_cd4.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_